Lesnar and Heyman decided to finish their night as soon as possible as a sign of protest because they were not at the main event.
The beast launched a brutal attack on Rollins before the bell was ringing, but the challenger used the judge who was dropped.
Now Beast Slayer delivered Low Blow, and then won three Stomp on the UFC legend.
After the match, the architect came out with the Universal Prize at the celebratory audience.
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The cameras then also turn off WWE went on a short ad.
Lesnar remained lying on his back and looked obviously depressed as Heyman stood above him and apparently comforted him after his heartbroken defeat.
Jun MMA then knelt and expressed disappointment with the result of the match.
The sixth world champion stood up and was greeted by the standing ovations of the fans before he left Heyman on the back.
The future of Lesnar is uncertain now, because rumors have suggested that they will return to the UFC.
Former WWE champion was linked to the UFC heavyweight championship with Daniel Cormier.
It is expected that the former Universal Champion will join the Dana White promotion last year and after WrestleMania 34.
However, Lesnar defeated Romano Reigns and signed a new contract with Vince McMahon.
Rollins is expected to return the Universal Championship to RAW full time.
But Lesnar is unknown to the next time.